GrowthModels Module

Functions and values

Function or value Description

exponential

Full Usage: exponential

Returns: Model

exponential growth model

Returns: Model

getSolverOptionsGompertz xData yDataLog expectedGenerationTime usedLogTransform

Full Usage: getSolverOptionsGompertz xData yDataLog expectedGenerationTime usedLogTransform

Parameters:
    xData : float[] -
    yDataLog : float[] -
    expectedGenerationTime : float -
    usedLogTransform : float -> float -

Returns: SolverOptions

determines the solver options for cell count growth data (must be in log space). For untransformed data use 'id' as transform.

xData : float[]

yDataLog : float[]

expectedGenerationTime : float

usedLogTransform : float -> float

Returns: SolverOptions

Example

gompertz

Full Usage: gompertz

Returns: Model

The gompertz function describes the log cell count at time point t.

Returns: Model

janoschek

Full Usage: janoschek

Returns: Model

stable growth model similar to weibull model

Returns: Model

morganMercerFlodin

Full Usage: morganMercerFlodin

Returns: Model

4 parameter Morgan-Mercer-Flodin growth model

Returns: Model

richards

Full Usage: richards

Returns: Model

4 parameter richards curve with minimum at 0; d <> 1

Returns: Model

richardsGeneric

Full Usage: richardsGeneric

Returns: Model

Generalized logistic function or curve, also known as Richards' curve with 7 parameters. Logistic function of the form "Y(t) = A + (K - A) / (C + Q * e^(-B * (t - M)))**(1. / v)"

Returns: Model

verhulst

Full Usage: verhulst

Returns: Model

3 parameter verhulst logistic model with lower asymptote=0

Returns: Model

verhulst4Param

Full Usage: verhulst4Param

Returns: Model

4 parameter verhulst model with variably lowers asymptote

Returns: Model

vonBertalanffy

Full Usage: vonBertalanffy

Returns: Model

3 parameter von Bertalanffy growth model

Returns: Model

weibull

Full Usage: weibull

Returns: Model

weibull growth model; if d=1 then it is a simple exponential growth model

Returns: Model